When teleporting to the transporter that doesn't have its beam facing up, you will spawn above it regardless.
The module spawn location has its axis rotation relative to the ship core. However, the beam effect it shows is relative to the module rotation.
Can be irritating in the situation where you spawn on the other side of ceilings. (with upside down modules)
Blueprint to cause it:
The transporter module will always try to place the player on top of itself with relation to the entity its mounted on, regardless of the facing direction of the module. It will also place a player into a solid wall.
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-Confirmed-
The transporter module will always try to place the player on top of itself with relation to the entity its mounted on regardless of the facing direction of the module. It will also place a player into a solid wall.