You are able to link many modules with logic so most would expect that they were turned on/enabled if you give them a true signal.
This is not the case, probably is a missing/overlooked feature but then the game should not allow you to link to blocks where logic signals have no influence over.
For example you can link logic to system blocks too (power reactor, thrust,...) yet that doesn't do anything either.
So either give it function or disable linking for those specific blocks. See Tester information for block list.