Making a simply rotator (and controls) I used pipes to hide the logic lines from the lower Activation. The ASCII diagram below will explain the circuit and malfunction:
AND
ROTATOR
BUTTON
PIPE
ACTIVATION
The logic is ACT -> AND & BUTTON
BUTTON -> AND
AND -> ROTATOR
The idea is you can start & stop rotation.. works great.. except for the pipe. When the pipe is there the unit does not rotate and the ROTATOR will often disappear (though it's still there). Once it's bugged your screwed I could find no way of restoring functionality without deleting the works and rebuilding.